Basic Information
Locus ID:
Tel3E01G350700
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 273860610 | 273865182 | - | Tel3E01G350700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.12 | 90,972.43 Da | 74.45 | 63.95 | -0.96 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 17 | 48 | 5.1357E-4 | IPR001202 |
| CDD | cd18787 | SF2_C_DEAD | 377 | 506 | 2.94317E-63 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 388 | 497 | 3.3E-35 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 182 | 351 | 2.7E-48 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 230 | 514 | 1.22E-75 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 8 | 49 | 3.42E-7 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 369 | 539 | 4.3E-60 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 132 | 368 | 3.9E-84 | IPR027417 |
| SMART | SM00456 | ww_5 | 15 | 48 | 4.2E-4 | IPR001202 |
| SMART | SM00487 | ultradead3 | 177 | 380 | 3.6E-63 | IPR014001 |
| SMART | SM00490 | helicmild6 | 417 | 497 | 2.0E-35 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 189 | 363 | 30.207508 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 14 | 48 | 10.5807 | IPR001202 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 158 | 186 | 9.769423 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 392 | 536 | 25.910213 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 309 | 317 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 20 | 46 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 535 | 816 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 87 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 549 | 629 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 630 | 671 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 692 | 741 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_037412923.1 | DEAD-box ATP-dependent RNA helicase 40-like isoform X1 [Triticum dicoccoides] | 0 |
| Q5JKF2 | DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0549400 PE=2 SV=2 | 0 | |
| TrEMBL | N0E6R8 | DEAD-box ATP-dependent RNA helicase, putative OS=Triticum aestivum OX=4565 GN=TAA_ctg0355a.00030 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology