Basic Information
Locus ID:
Tel3E01G303700
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 184843794 | 184854204 | - | Tel3E01G303700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.96 | 124,581.94 Da | 43.10 | 78.89 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 910 | 941 | 0.22 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 436 | 472 | 3.0E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 333 | 652 | 2.78E-41 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 829 | 1089 | 2.24E-36 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 747 | 963 | 5.4E-22 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 525 | 651 | 2.1E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 966 | 1120 | 1.3E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 312 | 524 | 2.3E-31 | IPR015943 |
| SMART | SM00320 | WD40_4 | 998 | 1034 | 5.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 385 | 425 | 7.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 474 | 515 | 0.0042 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 5.2E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 564 | 608 | 1.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 820 | 857 | 83.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 860 | 900 | 2.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 518 | 561 | 88.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 431 | 472 | 2.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 325 | 364 | 0.16 | IPR001680 |
| SMART | SM00320 | WD40_4 | 903 | 942 | 0.0038 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 3.5E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 1057 | 1089 | 160.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 438 | 473 | 8.676514 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.556183 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 910 | 951 | 11.64467 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 438 | 473 | 10.307941 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.212169 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 910 | 941 | 9.493783 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 586 | 617 | 9.40565 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 459 | 473 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1091 | 1128 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1111 | 1128 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16830.1 | TOPLESS-related 2. | 0 |
| RefSeq | XP_044356369.1 | protein TPR1 [Triticum aestivum] | 0 |
| Q5NBT9 | Protein TPR1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453EM79 | Topless-related protein 2 OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology