Basic Information
Locus ID:
Tel3E01G256800
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
RNA binding (RRM RBD RNP motifs) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 144160027 | 144164973 | + | Tel3E01G256800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.98 | 100,774.61 Da | 47.59 | 69.52 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12438 | RRM_CNOT4 | 78 | 173 | 1.83759E-42 | IPR034261 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 77 | 161 | 8.73E-11 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 84 | 162 | 6.6E-21 | IPR012677 |
| SMART | SM00361 | rrm2_1 | 84 | 162 | 2.0E-11 | IPR003954 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 83 | 166 | 10.496632 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 324 | 351 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 825 | 842 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 741 | 780 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 459 | 489 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 572 | 597 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 294 | 309 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 294 | 351 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 821 | 842 | - | - |
| Coils | Coil | Coil | 37 | 57 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60170.1 | RNA binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_044356023.1 | serine-rich adhesin for platelets-like isoform X1 [Triticum aestivum] | 0 |
| O95628 | CCR4-NOT transcription complex subunit 4 OS=Homo sapiens OX=9606 GN=CNOT4 PE=1 SV=3 | 0 | |
| TrEMBL | A0A3B6GQ66 | CCR4-NOT transcription complex subunit 4 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH02.235, BH02.242, CH02.249 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0246290.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_051130 |
| Poaceae | Oryza coarctata | 1 | Oco02G004820 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g11130.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G021800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0205133, Pt_Chr0205183 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G028050, Chr05G005750 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G256800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG018050, gene_TRIDC3BG023800 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G133600.1, TraesCS3B02G165900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb120310_P002 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g7259 |