Basic Information
Locus ID:
Tel3E01G248200
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 136983615 | 136984247 | - | Tel3E01G248200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 22,975.19 Da | 57.24 | 78.62 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 127 | 170 | 5.9E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 118 | 178 | 6.82E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 94 | 176 | 2.5E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 128 | 169 | 2.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 128 | 170 | 12.179465 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 210 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35000.1 | RING/U-box superfamily protein. E3 ligase-like protein induced by chitin oligomers. | 0 |
| RefSeq | XP_044353115.1 | RING-H2 finger protein ATL39-like [Triticum aestivum] | 0 |
| O64763 | E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana OX=3702 GN=ATL9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6GTQ0 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH05.639, BH05.691, CH05.795 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0401660, gene-QOZ80_5BG0450220 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0031470.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_010423, gene-QYE76_010463, gene-QYE76_051207 ... |
| Poaceae | Oryza coarctata | 2 | Oco09G004480, Oco10G004290 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g11490.1, LOC_Os05g11860.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G083400 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr12G025740, Chr18G004300, Chr22G012960 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G230700, Tel3E01G248200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG018190, gene_TRIDC1BG022260 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS1A02G126200.1.cds1, TraesCS1B02G145400.1.cds1 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-17972, nbis-gene-41783 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27850 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000023l.13 |