Basic Information
Locus ID:
Tel3E01G227300
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Histone deacetylase 6
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 117685727 | 117692632 | - | Tel3E01G227300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.46 | 87,195.37 Da | 56.80 | 69.64 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09992 | HDAC_classII | 447 | 733 | 3.02863E-113 | - |
| Pfam | PF00850 | Histone deacetylase domain | 447 | 731 | 1.2E-79 | IPR023801 |
| Pfam | PF01426 | BAH domain | 152 | 262 | 1.1E-17 | IPR001025 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 424 | 766 | 4.08E-94 | IPR023696 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 260 | 316 | 4.65E-13 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 258 | 329 | 1.4E-12 | IPR013083 |
| Gene3D | G3DSA:2.30.30.490 | - | 116 | 248 | 1.0E-25 | IPR043151 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 420 | 783 | 7.6E-110 | IPR037138 |
| SMART | SM00249 | PHD_3 | 268 | 313 | 1.2E-7 | IPR001965 |
| SMART | SM00439 | BAH_4 | 150 | 264 | 2.2E-27 | IPR001025 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 150 | 264 | 20.718153 | IPR001025 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 266 | 315 | 9.1073 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 269 | 312 | - | IPR019786 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 581 | 596 | 7.7E-12 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 547 | 570 | 7.7E-12 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 669 | 679 | 7.7E-12 | IPR000286 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 368 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 92 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G61060.1 | histone deacetylase 5. Encodes a member of the histone deacetylase family. | 0 |
| RefSeq | XP_019162381.1 | PREDICTED: chromatin remodeling protein EBS-like [Ipomoea nil] | 0 |
| Q8RX28 | Histone deacetylase 5 OS=Arabidopsis thaliana OX=3702 GN=HDA5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9SQI0 | Hist_deacetyl domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_53278 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology