Basic Information
Locus ID:
Tel3E01G226400
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 116512154 | 116512525 | + | Tel3E01G226400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.23 | 14,048.70 Da | 69.51 | 57.07 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 32 | 73 | 9.3E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 29 | 80 | 7.51E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 18 | 88 | 4.2E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 32 | 72 | 1.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 32 | 73 | 12.356501 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05200.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6). | 0 |
| RefSeq | XP_044445428.1 | E3 ubiquitin-protein ligase RNF181-like [Triticum aestivum] | 0 |
| Q8RXX9 | E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6EJ28 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg55313 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14352 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1AG0021820 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10009637m.g.v1.0 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0033s00012.v1.0 |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_016725, gene-QYE76_027791, gene-QYE76_027792 ... |
| Poaceae | Oryza coarctata | 1 | Oco12G002140 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g05200.1 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0402251 |
| Poaceae | Thinopyrum elongatum | 5 | Tel3E01G225000, Tel3E01G226000, Tel3E01G226400 ... |
| Poaceae | Triticum aestivum | 15 | TraesCS3A02G309200.1.cds1, TraesCS3A02G309300.1.cds1 ... |