Basic Information
Locus ID:
Tel3E01G189800
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 91556156 | 91560951 | - | Tel3E01G189800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.36 | 43,051.15 Da | 48.70 | 79.52 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 218 | 253 | 0.0014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 258 | 292 | 0.017 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 109 | 134 | 0.017 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 108 | 384 | 3.75E-41 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 107 | 395 | 2.5E-40 | IPR015943 |
| SMART | SM00320 | WD40_4 | 216 | 253 | 1.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 99 | 134 | 0.07 | IPR001680 |
| SMART | SM00320 | WD40_4 | 256 | 293 | 0.012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 344 | 383 | 17.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 172 | 209 | 31.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 121 | 143 | 10.007177 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 223 | 262 | 13.415834 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 223 | 256 | 10.469233 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 240 | 254 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 121 | 135 | 3.0E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 240 | 254 | 3.0E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 280 | 294 | 3.0E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 103 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51980.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037404489.1 | zinc finger CCCH domain-containing protein 17-like [Triticum dicoccoides] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3B6EFP1 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology