Basic Information
Locus ID:
Tel3E01G174600
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Type III restriction enzyme, res subunit
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 81189497 | 81196633 | - | Tel3E01G174600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.77 | 142,510.31 Da | 65.72 | 52.62 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 771 | 900 | 3.60858E-60 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 576 | 746 | 1.2E-47 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 783 | 891 | 4.0E-32 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 624 | 908 | 1.65E-74 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 17 | 52 | 5.34E-7 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 526 | 761 | 1.3E-86 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 762 | 933 | 3.8E-58 | IPR027417 |
| SMART | SM00456 | ww_5 | 21 | 52 | 1.9E-4 | IPR001202 |
| SMART | SM00487 | ultradead3 | 571 | 774 | 1.3E-63 | IPR014001 |
| SMART | SM00490 | helicmild6 | 811 | 891 | 1.9E-31 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 583 | 757 | 30.553314 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 52 | 11.0338 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 786 | 930 | 25.068695 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 552 | 580 | 10.592969 | IPR014014 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 703 | 711 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 50 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1205 | 1222 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1117 | 1177 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 988 | 1015 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 193 | 284 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1182 | 1204 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 284 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 930 | 954 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 152 | 172 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 991 | 1005 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1065 | 1271 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_040259405.1 | DEAD-box ATP-dependent RNA helicase 40 isoform X1 [Aegilops tauschii subsp. strangulata] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6GM54 | DEAD-box ATP-dependent RNA helicase 40 OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology