Basic Information
Locus ID:
Tel3E01G021500
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 8178280 | 8194359 | - | Tel3E01G021500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.34 | 39,581.15 Da | 42.13 | 79.19 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 271 | 305 | 2.7E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 310 | 347 | 4.1E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 177 | 347 | 2.75E-32 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 181 | 348 | 2.5E-46 | IPR015943 |
| SMART | SM00320 | WD40_4 | 220 | 263 | 8.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 266 | 305 | 3.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 309 | 348 | 6.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 170 | 207 | 200.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 316 | 348 | 10.23196 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 316 | 348 | 10.608706 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 273 | 305 | 10.574686 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 273 | 305 | 12.714052 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79990.2 | structural molecules. | 0 |
| RefSeq | XP_048561242.1 | putative coatomer subunit beta'-3 isoform X2 [Triticum urartu] | 0 |
| Q54YD8 | Coatomer subunit beta' OS=Dictyostelium discoideum OX=44689 GN=copb2 PE=3 SV=1 | 0 | |
| TrEMBL | A0A3B6E8R2 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology