Basic Information
Locus ID:
Tel2E01G978000
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 699985109 | 699986389 | + | Tel2E01G978000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.52 | 45,103.46 Da | 42.41 | 96.64 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 10 | 50 | 3.07132E-17 | - |
| Pfam | PF04564 | U-box domain | 6 | 77 | 4.5E-17 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 3 | 76 | 2.12E-23 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 197 | 405 | 4.46E-9 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 80 | 410 | 3.3E-7 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 77 | 7.0E-25 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 9 | 72 | 5.6E-22 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 5 | 79 | 24.468973 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_044454290.1 | E3 ubiquitin-protein ligase PUB23-like [Triticum aestivum] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6TZA2 | RING-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology