Basic Information
Locus ID:
Tel2E01G963600
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 693485182 | 693492228 | + | Tel2E01G963600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.70 | 89,120.95 Da | 55.10 | 67.71 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 446 | 481 | 1.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 328 | 361 | 1.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 620 | 657 | 0.012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 486 | 523 | 1.7E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 323 | 661 | 1.81E-56 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 435 | 700 | 1.3E-48 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 285 | 380 | 4.8E-12 | IPR015943 |
| SMART | SM00320 | WD40_4 | 769 | 814 | 240.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 525 | 564 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 576 | 616 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 484 | 523 | 4.9E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 323 | 362 | 1.9E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 617 | 658 | 0.0077 | IPR001680 |
| SMART | SM00320 | WD40_4 | 443 | 481 | 7.1E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 490 | 524 | 10.390142 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 450 | 484 | 11.233774 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 490 | 524 | 12.480124 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 330 | 367 | 11.787407 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 330 | 371 | 14.719144 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 450 | 490 | 14.886235 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 468 | 482 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 349 | 363 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 349 | 363 | 1.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 468 | 482 | 1.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 510 | 524 | 1.1E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 74 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 746 | 760 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 745 | 764 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 120 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 268 | 306 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 271 | 293 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 711 | 735 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 252 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 137 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 93 | 167 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 29 | - | - |
| Coils | Coil | Coil | 276 | 296 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54200.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_048559874.1 | WD repeat-containing protein 44-like [Triticum urartu] | 0 |
| Q9XSC3 | WD repeat-containing protein 44 OS=Bos taurus OX=9913 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6CGM5 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology