Basic Information
Locus ID:
Tel2E01G962200
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 692953747 | 692961774 | - | Tel2E01G962200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.17 | 89,004.80 Da | 49.09 | 73.93 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 1 | 159 | 1.90751E-41 | - |
| Pfam | PF13925 | con80 domain of Katanin | 656 | 812 | 1.9E-49 | IPR028021 |
| Pfam | PF00400 | WD domain, G-beta repeat | 71 | 109 | 5.9E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 2 | 25 | 0.0023 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 31 | 67 | 1.2E-10 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 2 | 192 | 4.88E-46 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 68 | 246 | 1.5E-22 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 67 | 1.0E-23 | IPR015943 |
| SMART | SM00320 | WD40_4 | 112 | 150 | 63.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 28 | 67 | 8.3E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 70 | 109 | 8.8E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1 | 25 | 79.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1 | 27 | 10.07378 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 77 | 112 | 12.789221 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 77 | 118 | 16.089291 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 35 | 76 | 18.194637 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1 | 34 | 12.780889 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 35 | 72 | 13.975578 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 54 | 68 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 96 | 110 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 12 | 26 | 2.3E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 54 | 68 | 2.3E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 96 | 110 | 2.3E-7 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 1 | 817 | 14.085591 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 315 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 385 | 420 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 598 | 635 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 266 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 315 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 472 | 496 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08390.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_037479999.1 | katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4-like [Triticum dicoccoides] | 0 |
| F4KB17 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 OS=Arabidopsis thaliana OX=3702 GN=KTN80.3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453DG53 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology