Basic Information
Locus ID:
Tel2E01G942100
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 684335295 | 684339340 | - | Tel2E01G942100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 39,361.68 Da | 36.45 | 94.12 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 205 | 300 | 1.00921E-45 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 208 | 291 | 1.4E-23 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 55 | 201 | 1.6E-37 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 98 | 313 | 4.37E-51 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 206 | 336 | 2.0E-33 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 8 | 205 | 1.1E-50 | IPR027417 |
| SMART | SM00487 | ultradead3 | 49 | 235 | 1.6E-36 | IPR014001 |
| SMART | SM00490 | helicmild6 | 207 | 291 | 9.4E-29 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 188 | 330 | 22.484386 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 30 | 58 | 9.921339 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 61 | 206 | 18.733002 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 177 | 185 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19760.1 | eukaryotic initiation factor 4A-III. Encodes an RNA helicase that may be a component of the Exon Junction Complex. Subcellular localization is modulated by stress. Under normal conditions it is localized to the nuceloplasm but under hyopoxic conditions it localizes to the nucleolus and splicing speckles. | 0 |
| RefSeq | XP_020189749.1 | eukaryotic initiation factor 4A-III homolog B isoform X2 [Aegilops tauschii subsp. strangulata] | 0 |
| Q10I26 | Eukaryotic initiation factor 4A-III homolog B OS=Oryza sativa subsp. japonica OX=39947 GN=EIF4A3B PE=1 SV=1 | 0 | |
| TrEMBL | A0A453DF01 | RNA helicase OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology