Basic Information
Locus ID:
Tel2E01G808400
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 626620248 | 626626471 | - | Tel2E01G808400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 116,307.06 Da | 48.16 | 79.03 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 258 | 610 | 2.60969E-86 | - |
| CDD | cd18793 | SF2_C_SNF | 880 | 1012 | 4.2705E-58 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 272 | 687 | 1.0E-67 | IPR000330 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 747 | 783 | 4.0E-7 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 903 | 1002 | 1.1E-14 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 223 | 610 | 2.08E-45 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 619 | 1059 | 2.66E-56 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 726 | 784 | 5.74E-11 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 625 | 730 | 2.0E-5 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 731 | 789 | 2.0E-8 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 840 | 1055 | 1.6E-56 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 475 | 624 | 4.1E-31 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 381 | 466 | 5.1E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 229 | 315 | 1.1E-11 | IPR038718 |
| SMART | SM00487 | ultradead3 | 254 | 577 | 1.8E-23 | IPR014001 |
| SMART | SM00490 | helicmild6 | 919 | 1002 | 4.9E-19 | IPR001650 |
| SMART | SM00184 | ring_2 | 727 | 778 | 1.5E-6 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 395 | 572 | 11.313871 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 727 | 779 | 11.382803 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 883 | 1055 | 14.32315 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 756 | 765 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 378 | 392 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 370 | 392 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_044334464.1 | helicase-like transcription factor CHR28 [Triticum aestivum] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6DNK7 | Helicase-like transcription factor CHR28 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology