HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: Tel2E01G788800
Species & Taxonomic ID: Thinopyrum elongatum & 4588
Genome Assembly: GWHABKY00000000
Description:
Maps and Mapping Data
Chromosome Start End Strand ID
chr2 617273754 617275001 + Tel2E01G788800
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.04 47,980.93 Da 42.52 81.45 -0.27
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
TIGRFAM TIGR01640 F_box_assoc_1: F-box protein interaction domain 138 360 4.8E-23 IPR017451
Coils Coil Coil 368 388 - -
Best hit
Source Best Hit ID Description E-value
TAIR AT3G52320.1 F-box and associated interaction domains-containing protein. 0
RefSeq XP_051211534.1 F-box/LRR-repeat/kelch-repeat protein At1g09650-like [Lolium perenne] 0
Swiss-Prot Q9FT50 Putative F-box protein At3g52320 OS=Arabidopsis thaliana OX=3702 GN=At3g52320 PE=4 SV=1 0
TrEMBL A0A3B6CD65 FBA_1 domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Arecaceae Phoenix dactylifera 1 gene-LOC103709993
Asparagaceae Asparagus officinalis 1 AsparagusV1_06.187.V1.1
Poaceae Echinochloa crus-galli 24 AH02.2990, AH07.122, AH07.134, AH09.801, BH01.2596, BH07.313 ...
BH05.3914, BH05.3915, BH06.2751, BH07.2057, BH07.71, BH09.200, CH01.2792, CH02.1075, CH03.4547, CH03.4708, CH03.4731, CH03.4734, CH03.4757, CH03.4758, CH04.1894, CH05.2057, CH05.4128, CH05.4444
Poaceae Eleusine coracana subsp. coracana 13 gene-QOZ80_1BG0057680, gene-QOZ80_2AG0105300 ...
gene-QOZ80_2BG0152490, gene-QOZ80_3BG0286140, gene-QOZ80_3BG0297760, gene-QOZ80_4AG0320530, gene-QOZ80_4AG0320550, gene-QOZ80_4AG0322110, gene-QOZ80_4AG0322130, gene-QOZ80_4BG0348890, gene-QOZ80_4BG0351940, gene-QOZ80_4BG0351950, gene-QOZ80_6AG0536790
Poaceae Hordeum vulgare 11 HORVU.MOREX.r3.2HG0122350.1.CDS1 ...
HORVU.MOREX.r3.2HG0132050.1.CDS1, HORVU.MOREX.r3.2HG0168030.1.CDS1, HORVU.MOREX.r3.2HG0168040.1.CDS1, HORVU.MOREX.r3.2HG0194150.1.CDS1, HORVU.MOREX.r3.2HG0194780.1.CDS1, HORVU.MOREX.r3.3HG0221170.1.CDS1, HORVU.MOREX.r3.5HG0530150.1.CDS1, HORVU.MOREX.r3.6HG0543810.1.CDS1, HORVU.MOREX.r3.7HG0637410.1.CDS1, HORVU.MOREX.r3.7HG0637430.1.CDS1
Poaceae Lolium multiflorum 28 gene-QYE76_006812, gene-QYE76_018860, gene-QYE76_025880 ...
gene-QYE76_026959, gene-QYE76_026965, gene-QYE76_036377, gene-QYE76_036382, gene-QYE76_037512, gene-QYE76_038561, gene-QYE76_039703, gene-QYE76_039705, gene-QYE76_043546, gene-QYE76_044498, gene-QYE76_048448, gene-QYE76_049122, gene-QYE76_049815, gene-QYE76_052134, gene-QYE76_057658, gene-QYE76_057659, gene-QYE76_057662, gene-QYE76_057663, gene-QYE76_057664, gene-QYE76_058817, gene-QYE76_058828, gene-QYE76_060553, gene-QYE76_061038, gene-QYE76_066315, gene-QYE76_071663
Poaceae Oryza coarctata 12 Oco01G010480, Oco01G023330, Oco02G015220, Oco03G010080 ...
Oco05G014210, Oco07G003900, Oco07G003910, Oco07G004650, Oco12G003190, Oco12G003280, Oco18G006330, Oco23G002440
Poaceae Oryza sativa 18 LOC_Os01g45020.2, LOC_Os02g15680.1, LOC_Os02g27400.1 ...
LOC_Os02g51580.1, LOC_Os03g25080.1, LOC_Os04g31530.1, LOC_Os04g31540.1, LOC_Os04g31570.1, LOC_Os06g07380.1, LOC_Os06g07450.1, LOC_Os06g07460.1, LOC_Os06g19670.1, LOC_Os08g29400.1, LOC_Os09g27520.1, LOC_Os09g27570.1, LOC_Os09g27660.3, LOC_Os10g24870.1, LOC_Os12g38090.1
Poaceae Paspalum vaginatum 8 gene-BS78_03G214100, gene-BS78_03G214200 ...
gene-BS78_04G106800, gene-BS78_06G017700, gene-BS78_06G065900, gene-BS78_09G211600, gene-BS78_10G223700, gene-BS78_10G275800
Poaceae Puccinellia tenuiflora 23 Pt_Chr0100567, Pt_Chr0100612, Pt_Chr0101012, Pt_Chr0204969 ...
Pt_Chr0204971, Pt_Chr0206814, Pt_Chr0305310, Pt_Chr0305585, Pt_Chr0305651, Pt_Chr0305654, Pt_Chr0401364, Pt_Chr0500386, Pt_Chr0500513, Pt_Chr0500567, Pt_Chr0501495, Pt_Chr0501772, Pt_Chr0501783, Pt_Chr0603263, Pt_Chr0605307, Pt_Chr0605309, Pt_Chr0703331, Pt_Chr0703332, Pt_Ctg00334
Poaceae Sporobolus alterniflorus 10 Chr06G014710, Chr15G016750, Chr15G024360, Chr19G008640 ...
Chr20G006730, Chr23G015000, Chr26G004820, Chr27G007850, Chr27G007860, Chr29G006440
Poaceae Thinopyrum elongatum 11 Tel2E01G205100, Tel2E01G562900, Tel2E01G764100 ...
Tel2E01G788800, Tel3E01G082500, Tel3E01G810100, Tel5E01G799100, Tel6E01G117000, Tel6E01G363400, Tel7E01G056400, Telscf40501G000100
Poaceae Triticum dicoccoides 6 gene_TRIDC1BG061400, gene_TRIDC3AG074610 ...
gene_TRIDC3BG030670, gene_TRIDC3BG030700, gene_TRIDC6BG030800, gene_TRIDC7AG078480
Poaceae Triticum aestivum 43 TraesCS2A02G341300.1.cds1, TraesCS2B02G104500.1.cds1 ...
TraesCS2B02G151400.1.cds1, TraesCS2B02G196900.1, TraesCS2B02G339000.1, TraesCS2B02G490300.1.cds1, TraesCS2D02G093200.1.cds1, TraesCS2D02G131500.1.cds1, TraesCS2D02G318900.1.cds1, TraesCS2D02G441600.1.cds1, TraesCS2D02G441700.1.cds1, TraesCS2D02G449800.1, TraesCS3A02G001000.1.cds1, TraesCS3A02G037400.1.cds1, TraesCS3A02G526900.1.cds1, TraesCS3B02G002100.1.cds1, TraesCS3B02G046300.1.cds1, TraesCS3B02G046400.1.cds1, TraesCS3B02G178900.1, TraesCS3B02G179000.1.cds1, TraesCS3B02G210700.1, TraesCS3B02G210800.1, TraesCS3D02G042200.1.cds1, TraesCS3D02G532600.1.cds1, TraesCS4A02G356900.1, TraesCS4A02G461900.1.cds1, TraesCS4B02G001400.1.cds1, TraesCS4B02G060900.1.cds1, TraesCS4B02G061700.1.cds1, TraesCS5A02G197600.1.cds1, TraesCS5A02G200300.1, TraesCS5B02G198900.1.cds1, TraesCS5B02G515700.1.cds1, TraesCS5D02G030900.1.cds1, TraesCS6B02G201900.1, TraesCS6B02G202100.1, TraesCS7A02G027600.1.cds1, TraesCS7A02G569200.1.cds1, TraesCS7B02G489400.1.cds1, TraesCS7D02G009500.1.cds1, TraesCSU02G055600.1.cds1, TraesCSU02G184600.1.cds1, TraesCSU02G184700.1.cds1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.