Basic Information
Locus ID:
Tel2E01G751200
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Cobalamin synthesis protein cobW C-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 597462973 | 597465615 | + | Tel2E01G751200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 53,669.82 Da | 49.81 | 74.37 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 187 | 460 | 1.40046E-44 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 286 | 321 | 8.0E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 425 | 460 | 0.0024 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 337 | 375 | 0.023 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 204 | 263 | 3.6E-7 | IPR024977 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 166 | 465 | 4.08E-57 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 111 | 462 | 5.5E-123 | IPR015943 |
| SMART | SM00320 | WD40_4 | 421 | 460 | 1.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 198 | 237 | 0.0012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 240 | 278 | 2.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 333 | 375 | 0.0018 | IPR001680 |
| SMART | SM00320 | WD40_4 | 282 | 321 | 3.3E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 378 | 418 | 310.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 205 | 246 | 11.64467 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 205 | 237 | 8.544697 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 428 | 461 | 12.74747 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 289 | 323 | 11.65559 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 428 | 461 | 10.601049 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 289 | 330 | 14.886235 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 308 | 322 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 447 | 461 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 41 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33260.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.2) | 0 |
| RefSeq | XP_044458853.1 | cell division cycle 20.2, cofactor of APC complex-like [Triticum aestivum] | 0 |
| Q9S7I8 | Cell division cycle 20.2, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6B4Z1 | ANAPC4_WD40 domain-containing protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology