Basic Information
Locus ID:
Tel2E01G738600
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 589701901 | 589703663 | + | Tel2E01G738600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.21 | 40,275.34 Da | 64.59 | 50.51 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 324 | 365 | 3.73042E-16 | - |
| Pfam | PF13639 | Ring finger domain | 323 | 365 | 5.4E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 306 | 369 | 2.38E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 290 | 369 | 7.9E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 324 | 364 | 1.2E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 324 | 365 | 11.427062 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 194 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 210 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 63 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10650.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_044334097.1 | E3 ubiquitin-protein ligase RLIM-like [Triticum aestivum] | 0 |
| O49500 | E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana OX=3702 GN=MBR2 PE=1 SV=1 | 0 | |
| TrEMBL | W5BQU8 | Genome assembly, chromosome: II OS=Triticum aestivum OX=4565 GN=CAMPLR22A2D_LOCUS4349 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 6 | AH08.801, AH09.2204, BH08.846, BH09.2375, CH08.934 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_4AG0304900, gene-QOZ80_4BG0335860 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0193060.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_046124 |
| Poaceae | Oryza coarctata | 4 | Oco07G015150, Oco08G014650, Oco15G004780, Oco16G004480 |
| Poaceae | Oryza sativa | 2 | LOC_Os04g51400.2, LOC_Os08g14320.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_06G218200, gene-BS78_07G092900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0301410 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr0G027810, Chr16G003160, Chr17G002770, Chr23G003680 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G738600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG062860, gene_TRIDC2BG066550 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G437200.1, TraesCS2B02G456100.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb071710_P002, Zm00001eb414540_P002 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-48283, nbis-gene-53678, nbis-gene-5761 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g21921, Zma_g22681, Zma_g23819 |