Basic Information
Locus ID:
Tel2E01G733500
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 586673833 | 586697059 | - | Tel2E01G733500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.24 | 52,399.66 Da | 68.20 | 69.59 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 158 | 194 | 7.4E-9 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 151 | 199 | 8.7E-14 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 147 | 221 | 1.2E-19 | IPR015943 |
| SMART | SM00320 | WD40_4 | 156 | 195 | 4.6E-11 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 163 | 194 | 12.288313 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 163 | 194 | 14.886235 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G52360.3 | - | 0 |
| RefSeq | XP_030925466.1 | coatomer subunit beta'-1-like [Quercus lobata] | 0 |
| O42937 | Probable coatomer subunit beta' OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sec27 PE=3 SV=2 | 0 | |
| TrEMBL | A0A5K1E1L6 | WD_REPEATS_REGION domain-containing protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS22044 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G733500, Tel5E01G084000, Tel7E01G374100 |