Basic Information
Locus ID:
Tel2E01G687700
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 554240302 | 554243835 | + | Tel2E01G687700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.56 | 75,608.38 Da | 52.56 | 66.14 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 330 | 365 | 3.2E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 230 | 263 | 1.1E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 518 | 541 | 0.067 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 371 | 408 | 8.2E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 229 | 678 | 1.47E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 214 | 583 | 6.5E-61 | IPR015943 |
| SMART | SM00320 | WD40_4 | 463 | 499 | 1.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 644 | 679 | 54.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 410 | 449 | 0.77 | IPR001680 |
| SMART | SM00320 | WD40_4 | 225 | 264 | 8.7E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 328 | 366 | 9.9E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 369 | 408 | 2.0E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 500 | 541 | 0.01 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 232 | 263 | 16.256382 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 375 | 409 | 12.212779 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 518 | 541 | 10.475033 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 375 | 409 | 10.179234 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 232 | 263 | 13.369217 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 335 | 367 | 10.811958 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 335 | 375 | 13.983944 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 353 | 367 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 395 | 409 | 5.0E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 251 | 265 | 5.0E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 353 | 367 | 5.0E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 144 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 210 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 152 | 171 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 99 | 144 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 98 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G24320.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_044967475.1 | WD repeat-containing protein 44-like [Hordeum vulgare subsp. vulgare] | 0 |
| Q9R037 | WD repeat-containing protein 44 OS=Rattus norvegicus OX=10116 GN=Wdr44 PE=1 SV=1 | 0 | |
| TrEMBL | F2DVV6 | Predicted protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology