Basic Information
Locus ID:
Tel2E01G607700
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
IBR domain, a half RING-finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 495944307 | 495953586 | - | Tel2E01G607700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.24 | 66,337.92 Da | 61.77 | 57.81 | -0.72 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 134 | 184 | 2.88456E-14 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 282 | 329 | 1.8E-9 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 203 | 265 | 3.7E-15 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 129 | 215 | 1.65E-17 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 560 | 586 | 2.16E-5 | IPR036443 |
| SUPERFAMILY | SSF57850 | RING/U-box | 284 | 332 | 4.32E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 203 | 272 | 6.71E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 128 | 215 | 1.1E-17 | IPR013083 |
| Gene3D | G3DSA:2.30.30.380 | - | 559 | 588 | 1.8E-5 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 261 | 516 | 3.0E-86 | - |
| SMART | SM00547 | zf_4 | 562 | 586 | 5.4E-5 | IPR001876 |
| SMART | SM00647 | ibrneu5 | 278 | 339 | 0.069 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 203 | 265 | 7.0E-24 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 134 | 178 | 8.801028 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 130 | 343 | 50.327583 | IPR044066 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 564 | 583 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 517 | 558 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 49 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_037478296.1 | probable E3 ubiquitin-protein ligase ARI8 [Triticum dicoccoides] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6B1I3 | RBR-type E3 ubiquitin transferase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology