Basic Information
Locus ID:
Tel2E01G564000
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Poly(A) polymerase central domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 464092873 | 464094453 | + | Tel2E01G564000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.96 | 58,936.65 Da | 54.23 | 82.51 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 39 | 194 | 4.03902E-22 | - |
| Pfam | PF01909 | Nucleotidyltransferase domain | 75 | 113 | 1.4E-5 | IPR002934 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 2 | 348 | 5.2E-100 | IPR007012 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 351 | 417 | 7.5E-11 | IPR007010 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 9 | 193 | 1.31E-41 | IPR043519 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 350 | 482 | 4.12E-31 | IPR011068 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 195 | 348 | 3.14E-58 | - |
| Gene3D | G3DSA:1.10.1410.10 | - | 2 | 347 | 1.4E-140 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 32 | 188 | 1.4E-140 | IPR043519 |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 351 | 473 | 2.2E-25 | - |
| PIRSF | PIRSF018425 | PolyA_polymerase | 1 | 526 | 2.1E-187 | IPR014492 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 489 | 505 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 489 | 526 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32850.7 | nuclear poly(a) polymerase. Encodes a nuclear poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_037481607.1 | nuclear poly(A) polymerase 4-like [Triticum dicoccoides] | 0 |
| Q8VYW1 | Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6B0S5 | Poly(A) polymerase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology