Basic Information
Locus ID:
Tel2E01G537900
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
DEAD/DEAH box helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 440586925 | 440595636 | - | Tel2E01G537900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.01 | 134,233.88 Da | 48.65 | 74.47 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 441 | 643 | 7.47242E-98 | - |
| CDD | cd18794 | SF2_C_RecQ | 644 | 776 | 4.0212E-69 | - |
| Pfam | PF09382 | RQC domain | 861 | 974 | 7.0E-20 | IPR018982 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 662 | 766 | 6.0E-16 | IPR001650 |
| Pfam | PF00570 | HRDC domain | 1009 | 1074 | 1.5E-13 | IPR002121 |
| Pfam | PF16124 | RecQ zinc-binding | 778 | 854 | 1.8E-15 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 452 | 623 | 1.4E-18 | IPR011545 |
| SUPERFAMILY | SSF47819 | HRDC-like | 1000 | 1079 | 5.89E-15 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 425 | 785 | 2.66E-41 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 642 | 905 | 3.19E-57 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 859 | 973 | 1.4E-18 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 644 | 857 | 1.5E-64 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 999 | 1082 | 6.7E-22 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 410 | 643 | 1.6E-90 | IPR027417 |
| SMART | SM00341 | hrdc7 | 1002 | 1084 | 7.1E-4 | IPR002121 |
| SMART | SM00956 | RQC_2 | 863 | 973 | 4.1E-19 | IPR018982 |
| SMART | SM00490 | helicmild6 | 686 | 767 | 1.4E-26 | IPR001650 |
| SMART | SM00487 | ultradead3 | 446 | 652 | 1.4E-27 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 442 | 914 | 6.3E-164 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 658 | 816 | 19.999664 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 1003 | 1084 | 18.478073 | IPR002121 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 458 | 636 | 20.851856 | IPR014001 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 676 | 708 | 9.198942 | IPR001763 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1083 | 1097 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1083 | 1142 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 358 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_037477862.1 | ATP-dependent DNA helicase Q-like 4A isoform X1 [Triticum dicoccoides] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A8R7PFT5 | DNA helicase OS=Triticum urartu OX=4572 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology