Basic Information
Locus ID:
Tel2E01G528000
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 431747704 | 431749195 | - | Tel2E01G528000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.57 | 46,470.14 Da | 42.48 | 95.73 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 14 | 57 | 3.04625E-22 | - |
| Pfam | PF04564 | U-box domain | 10 | 83 | 2.0E-18 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 7 | 88 | 2.57E-26 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 182 | 393 | 1.26E-10 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 109 | 404 | 1.0E-11 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 88 | 5.6E-26 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 13 | 79 | 8.5E-28 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 9 | 86 | 35.932999 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52450.1 | plant U-box 22. Encodes a cytoplasmically localized U-box domain E3 ubiquitin ligase protein that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_020194067.1 | E3 ubiquitin-protein ligase PUB23 [Aegilops tauschii subsp. strangulata] | 0 |
| Q9SVC6 | E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana OX=3702 GN=PUB22 PE=1 SV=1 | 0 | |
| TrEMBL | R7W927 | RING-type E3 ubiquitin transferase OS=Aegilops tauschii OX=37682 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology