Basic Information
Locus ID:
Tel2E01G520900
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 425420050 | 425421741 | + | Tel2E01G520900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.56 | 18,338.54 Da | 28.31 | 81.12 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00850 | Histone deacetylase domain | 2 | 159 | 1.3E-48 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 2 | 159 | 1.87E-60 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 1 | 160 | 1.0E-63 | IPR037138 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 116 | 131 | 3.2E-18 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 84 | 107 | 3.2E-18 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 103 | 119 | 2.4E-7 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 1 | 5 | 2.4E-7 | IPR003084 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G44680.1 | histone deacetylase 9. Class I RPD3 type protein | 0 |
| RefSeq | XP_010239874.1 | histone deacetylase 9 isoform X2 [Brachypodium distachyon] | 0 |
| Q8H0W2 | Histone deacetylase 9 OS=Arabidopsis thaliana OX=3702 GN=HDA9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453BXM7 | histone deacetylase OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology