Basic Information
Locus ID:
Tel2E01G460200
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Ring finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 348907324 | 348909976 | + | Tel2E01G460200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.36 | 48,396.68 Da | 62.06 | 59.22 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 119 | 160 | 9.9E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 113 | 167 | 2.59E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 95 | 169 | 2.8E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 120 | 160 | 1.0E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 120 | 160 | 12.135206 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 399 | 425 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 402 | 425 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 279 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22000.1 | RING-H2 group F2A. encodes a RING-type E3 ubiquitin ligase implicated in gametogenesis. Double mutant analyses with RHF1a suggests that RHF2a may be involved in targetting ICK4KRP6 for degradation following meiosis in order to allow the mitoses associated with megagametogenesis and microgametogenesis to occur. RHF2a is expressed in all four floral whorls and is present at ~8-fold higher levels than RHF1a in inflorescences by RT-PCR analyses. | 0 |
| RefSeq | XP_044332111.1 | E3 ubiquitin-protein ligase RHF2A-like [Triticum aestivum] | 0 |
| Q9ZT42 | E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana OX=3702 GN=RHF2A PE=2 SV=1 | 0 | |
| TrEMBL | A0A453BM20 | RING-type domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg16404, jg31892, jg32747, jg37647 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_2324, gene_5741 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah003059, Ah027756 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g171410 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg1464, Sbi_jg35095, Sbi_jg56572 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg13793, Seu_jg3275 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00001891, GOSA_00003442 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl51351, Sgl51352, Sgl56599, Sgl72703, Sgl76242 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000006197, gene:ENSEOMG00000023043 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.5AG0011460, CQ.Regalona.r1.5BG0011930 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30055540, pistato.v30276980 |
| Apiaceae | Apium graveolens | 1 | Ag10G01715 |
| Arecaceae | Cocos nucifera | 1 | scaffold000920G000020 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103707430, gene-LOC103713514 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.3384.V1.1, AsparagusV1_03.426.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri16G14422, Ftri17G16089, Ftri2G30828 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G22000.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013828m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g23190.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g041550.2N, BniB05g042170.2N, BniB05g069060.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G1250, Ceq05G1533 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G1411, Cgl05G1532 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g00130 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g02990, gene.Thate08g10200 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-2376, nbisL1-mrna-443 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1872 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00003631, Pov_00015721, Pov_00026566 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G14696, Lb3G19279 |
| Poaceae | Echinochloa crus-galli | 9 | AH01.148, AH03.289, AH04.1690, BH03.370, BH03.3893, CH01.455 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_3AG0213230, gene-QOZ80_3BG0258370 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0150530.1, HORVU.MOREX.r3.4HG0364570.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_042582, gene-QYE76_066487 |
| Poaceae | Oryza coarctata | 4 | Oco05G025630, Oco06G026470, Oco21G007430, Oco22G008610 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g57500.1, LOC_Os11g36430.3 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_01G055900, gene-BS78_02G040400 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0303559, Pt_Chr0303567, Pt_Chr0307545 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr01G003220, Chr07G015990, Chr07G029270, Chr12G035110 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G460200, Tel4E01G276300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG033740, gene_TRIDC2BG038280 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G248400.1, TraesCS2B02G268800.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb117350_P002, Zm00001eb200150_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-15299, nbis-gene-16425 |
| Poaceae | Zoysia macrostachya | 4 | Zma_g18091, Zma_g18983, Zma_g2608, Zma_g326 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.1102, evm.TU.LG24.1104 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g00300 |
| Rhizophoraceae | Bruguiera sexangula | 5 | evm.TU.Scaffold_12_RagTag.489, evm.TU.Scaffold_13_RagTag.563 ... |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-24254, nbisL1-mrna-30507, nbisL1-mrna-4108 ... |
| Rhizophoraceae | Ceriops tagal | 4 | nbisL1-mrna-11240, nbisL1-mrna-14679, nbisL1-mrna-18143 ... |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-10181, nbisL1-mrna-15948, nbisL1-mrna-19744 ... |
| Rhizophoraceae | Kandelia candel | 4 | evm.TU.utg000009l.598, evm.TU.utg000015l.300 ... |
| Rhizophoraceae | Kandelia obovata | 4 | Maker00005722, Maker00015834, Maker00016329, Maker00017965 |
| Rhizophoraceae | Rhizophora apiculata | 4 | nbisL1-mrna-12508, nbisL1-mrna-4218, nbisL1-mrna-5716 ... |
| Rhizophoraceae | Rhizophora mangle | 4 | nbisL1-mrna-11969, nbisL1-mrna-13488, nbisL1-mrna-15231 ... |
| Salicaceae | Populus euphratica | 4 | populus_peu02487, populus_peu02493, populus_peu12382 ... |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132603782, gene-LOC132603787, gene-LOC132607249 ... |
| Solanaceae | Solanum chilense | 4 | SOLCI002726900, SOLCI002727100, SOLCI005759800 ... |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107002584, gene-LOC107023449, gene-LOC107023819 ... |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_13233, gene_3025 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G1285 |
| Zosteraceae | Zostera marina | 1 | Zosma06g30590.v3.1 |