Basic Information
Locus ID:
Tel2E01G245700
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 114406748 | 114407791 | - | Tel2E01G245700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.16 | 24,451.80 Da | 40.32 | 94.22 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 151 | 200 | 0.001 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 50 | 204 | 3.4E-17 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 96 | 215 | 7.9E-15 | IPR015943 |
| SMART | SM00320 | WD40_4 | 160 | 201 | 0.88 | IPR001680 |
| SMART | SM00320 | WD40_4 | 118 | 157 | 0.25 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 232 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.3 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_044327731.1 | autophagy-related protein 18a-like [Triticum aestivum] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B6D7R0 | WD_REPEATS_REGION domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0113920.1, HORVU.MOREX.r3.2HG0113930.1 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G245700 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC2BG016800 |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G115200.1, TraesCS2B02G134400.1 ... |
| Solanaceae | Solanum pennellii | 1 | gene-LOC114078477 |