Basic Information
Locus ID:
Tel2E01G226200
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 105061653 | 105069621 | - | Tel2E01G226200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.96 | 93,320.61 Da | 45.74 | 79.13 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 197 | 332 | 1.53509E-54 | - |
| CDD | cd17920 | DEXHc_RecQ | 2 | 196 | 3.33112E-97 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 16 | 174 | 1.4E-20 | IPR011545 |
| Pfam | PF09382 | RQC domain | 395 | 501 | 9.5E-24 | IPR018982 |
| Pfam | PF00570 | HRDC domain | 536 | 601 | 1.3E-12 | IPR002121 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 218 | 322 | 9.0E-20 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 335 | 390 | 1.7E-7 | IPR032284 |
| SUPERFAMILY | SSF47819 | HRDC-like | 530 | 611 | 1.42E-16 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 21 | 334 | 1.22E-54 | IPR027417 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 389 | 495 | 2.72E-24 | IPR036390 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 195 | 5.8E-73 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 197 | 392 | 3.3E-55 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 529 | 616 | 6.6E-15 | IPR044876 |
| Gene3D | G3DSA:1.10.10.10 | - | 393 | 514 | 4.7E-34 | IPR036388 |
| SMART | SM00490 | helicmild6 | 242 | 323 | 1.0E-25 | IPR001650 |
| SMART | SM00956 | RQC_2 | 398 | 503 | 7.0E-25 | IPR018982 |
| SMART | SM00341 | hrdc7 | 533 | 613 | 7.7E-7 | IPR002121 |
| SMART | SM00487 | ultradead3 | 10 | 207 | 1.6E-30 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 5 | 450 | 1.9E-148 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 217 | 364 | 18.077618 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 22 | 189 | 22.901548 | IPR014001 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 533 | 613 | 17.463125 | IPR002121 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 712 | 769 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 746 | 763 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.4 | - | 0 |
| RefSeq | XP_044322123.1 | ATP-dependent DNA helicase RecQ-like [Triticum aestivum] | 0 |
| Q9CL21 | ATP-dependent DNA helicase RecQ OS=Pasteurella multocida (strain Pm70) OX=272843 GN=recQ PE=3 SV=1 | 0 | |
| TrEMBL | A0A3B6C2Q2 | ATP-dependent DNA helicase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology