Basic Information
Locus ID:
Tel2E01G143300
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 66181970 | 66184868 | + | Tel2E01G143300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 29,658.11 Da | 42.76 | 87.13 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02123 | PA_C_RZF_like | 35 | 154 | 2.80321E-36 | IPR044744 |
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 230 | 272 | 7.78083E-21 | - |
| Pfam | PF13639 | Ring finger domain | 229 | 272 | 5.1E-13 | IPR001841 |
| Pfam | PF02225 | PA domain | 59 | 141 | 1.3E-9 | IPR003137 |
| SUPERFAMILY | SSF57850 | RING/U-box | 219 | 276 | 2.41E-18 | - |
| SUPERFAMILY | SSF52025 | PA domain | 81 | 148 | 3.66E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 191 | 277 | 3.7E-20 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 27 | 159 | 2.4E-25 | - |
| SMART | SM00184 | ring_2 | 230 | 271 | 1.1E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 230 | 272 | 12.710573 | IPR001841 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 17 | 7.0 | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66160.2 | receptor homology region transmembrane domain ring H2 motif protein 1. Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles. | 0 |
| RefSeq | XP_044330016.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 1-like [Triticum aestivum] | 0 |
| Q9M622 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=RMR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D5UWP7 | Genome assembly, chromosome: II OS=Triticum aestivum OX=4565 GN=CAMPLR22A2D_LOCUS524 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology