Basic Information
Locus ID:
Tel2E01G1053800
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
PA domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 736231578 | 736236234 | - | Tel2E01G1053800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.89 | 58,096.85 Da | 70.53 | 72.44 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02123 | PA_C_RZF_like | 14 | 170 | 1.27443E-47 | IPR044744 |
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 241 | 283 | 1.1709E-22 | - |
| Pfam | PF13639 | Ring finger domain | 240 | 283 | 9.1E-12 | IPR001841 |
| Pfam | PF02225 | PA domain | 59 | 149 | 1.9E-9 | IPR003137 |
| SUPERFAMILY | SSF52025 | PA domain | 84 | 130 | 3.53E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 223 | 289 | 1.54E-18 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 29 | 164 | 4.3E-26 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 201 | 287 | 7.3E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 241 | 282 | 1.3E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 241 | 283 | 12.430266 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 439 | 477 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 455 | 477 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 313 | 368 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_044459955.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 1-like isoform X1 [Triticum aestivum] | 0 |
| Q10R93 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0167500 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B6B7Y6 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology