Basic Information
Locus ID:
Tel2E01G067500
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 31108561 | 31114659 | - | Tel2E01G067500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 72,626.79 Da | 68.06 | 65.98 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16481 | RING-H2_TTC3 | 622 | 664 | 1.15972E-18 | - |
| Pfam | PF13639 | Ring finger domain | 623 | 664 | 3.6E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 617 | 666 | 2.92E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 597 | 668 | 2.7E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 623 | 663 | 1.2E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 623 | 664 | 12.386007 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 360 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 195 | 236 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 428 | 521 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34040.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_044329722.1 | probable E3 ubiquitin-protein ligase HIP1 [Triticum aestivum] | 0 |
| O49500 | E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana OX=3702 GN=MBR2 PE=1 SV=1 | 0 | |
| TrEMBL | W5C421 | Genome assembly, chromosome: II OS=Triticum aestivum OX=4565 GN=CAMPLR22A2D_LOCUS211 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH09.294, BH09.389, CH09.407 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_4BG0354160 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0098410.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_037823 |
| Poaceae | Oryza coarctata | 2 | Oco07G001300, Oco08G001630 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g10680.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G036200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0306075 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G017480, Chr25G014430, Chr26G002490, Chr30G014420 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G067500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG002250, gene_TRIDC2BG002330 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G022100.1, TraesCS2B02G030700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb087670_P002, Zm00001eb419620_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-32173 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20972 |