halophFGD

Basic Information

Locus ID: Tel2E01G042100

Species & Taxonomic ID: Thinopyrum elongatum & 4588

Genome Assembly: GWHABKY00000000

Description: Protein transport protein Sec24-like

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	18808880	18810367	-	Tel2E01G042100

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.02	25,806.05 Da	44.57	113.89	0.19

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF04815	Sec23/Sec24 helical domain	53	156	1.4E-14	IPR006900
SUPERFAMILY	SSF81811	Helical domain of Sec23/24	53	160	3.14E-20	IPR036175
Gene3D	G3DSA:1.20.120.730	Sec23/Sec24 helical domain	27	173	1.7E-29	-

Gene Ontology

Biological Process:

Cellular Component:

GO:0030127 (COPII vesicle coat)

KEGG Pathway

KO Term:

K14007 (protein transport protein SEC24)

Pathway:

ko04141 (Protein processing in endoplasmic reticulum) map04141 (Protein processing in endoplasmic reticulum)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G07100.1	Sec23/Sec24 protein transport family protein. Encodes SEC24a/ERMO2. Required for endoplasmic reticulum (ER) morphology.
RefSeq	XP_044971246.1	protein transport protein Sec24-like At3g07100 [Hordeum vulgare subsp. vulgare]
Swiss-Prot	Q9SFU0	Protein transport protein SEC24 A OS=Arabidopsis thaliana OX=3702 GN=SEC24A PE=1 SV=2
TrEMBL	E0YVF7	Coat protein II (Fragment) OS=Triticum aestivum OX=4565 GN=COPII PE=2 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Thinopyrum elongatum	5	Tel2E01G041700, Tel2E01G041800, Tel2E01G041900 ... Tel2E01G042000, Tel2E01G042100
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.49335.1
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-19638
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-22614