Basic Information
Locus ID:
Tel2E01G041900
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Protein transport protein Sec24-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 18722122 | 18724841 | - | Tel2E01G041900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.65 | 42,916.14 Da | 40.83 | 103.11 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04811 | Sec23/Sec24 trunk domain | 1 | 182 | 6.1E-42 | IPR006896 |
| SUPERFAMILY | SSF81811 | Helical domain of Sec23/24 | 192 | 266 | 3.4E-10 | IPR036175 |
| SUPERFAMILY | SSF53300 | vWA-like | 1 | 176 | 2.56E-39 | IPR036465 |
| SUPERFAMILY | SSF82754 | C-terminal, gelsolin-like domain of Sec23/24 | 290 | 379 | 1.57E-9 | IPR036180 |
| Gene3D | G3DSA:1.20.120.730 | Sec23/Sec24 helical domain | 181 | 278 | 1.2E-9 | - |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 1 | 180 | 1.5E-52 | IPR036465 |
| Gene3D | G3DSA:3.40.20.10 | Severin | 279 | 380 | 7.6E-16 | IPR029006 |
Gene Ontology
Biological Process:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07100.1 | Sec23/Sec24 protein transport family protein. Encodes SEC24a/ERMO2. Required for endoplasmic reticulum (ER) morphology. | 0 |
| RefSeq | XP_044971246.1 | protein transport protein Sec24-like At3g07100 [Hordeum vulgare subsp. vulgare] | 0 |
| Q9SFU0 | Protein transport protein SEC24 A OS=Arabidopsis thaliana OX=3702 GN=SEC24A PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6D421 | Protein transport protein Sec24-like At3g07100 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Thinopyrum elongatum | 5 | Tel2E01G041700, Tel2E01G041800, Tel2E01G041900 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.49335.1 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19638 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22614 |