Basic Information
Locus ID:
Tel2E01G041800
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Protein transport protein Sec24-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 18691165 | 18693885 | - | Tel2E01G041800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.08 | 41,911.14 Da | 44.30 | 103.28 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04815 | Sec23/Sec24 helical domain | 154 | 257 | 1.4E-14 | IPR006900 |
| Pfam | PF04811 | Sec23/Sec24 trunk domain | 1 | 133 | 1.3E-32 | IPR006896 |
| SUPERFAMILY | SSF81811 | Helical domain of Sec23/24 | 154 | 261 | 4.71E-20 | IPR036175 |
| SUPERFAMILY | SSF53300 | vWA-like | 1 | 135 | 9.67E-33 | IPR036465 |
| SUPERFAMILY | SSF82754 | C-terminal, gelsolin-like domain of Sec23/24 | 277 | 368 | 1.02E-10 | IPR036180 |
| Gene3D | G3DSA:3.40.20.10 | Severin | 267 | 369 | 3.5E-17 | IPR029006 |
| Gene3D | G3DSA:1.20.120.730 | Sec23/Sec24 helical domain | 133 | 266 | 8.6E-29 | - |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 1 | 132 | 2.4E-24 | IPR036465 |
Gene Ontology
Biological Process:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07100.1 | Sec23/Sec24 protein transport family protein. Encodes SEC24a/ERMO2. Required for endoplasmic reticulum (ER) morphology. | 0 |
| RefSeq | XP_044971246.1 | protein transport protein Sec24-like At3g07100 [Hordeum vulgare subsp. vulgare] | 0 |
| Q9SFU0 | Protein transport protein SEC24 A OS=Arabidopsis thaliana OX=3702 GN=SEC24A PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6D421 | Protein transport protein Sec24-like At3g07100 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Thinopyrum elongatum | 5 | Tel2E01G041700, Tel2E01G041800, Tel2E01G041900 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.49335.1 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19638 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22614 |