Basic Information
Locus ID:
Tel2E01G041700
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Protein transport protein Sec24-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 18654907 | 18658518 | - | Tel2E01G041700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 43,749.12 Da | 37.28 | 109.16 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04815 | Sec23/Sec24 helical domain | 143 | 246 | 1.5E-14 | IPR006900 |
| Pfam | PF04811 | Sec23/Sec24 trunk domain | 4 | 122 | 1.6E-25 | IPR006896 |
| SUPERFAMILY | SSF53300 | vWA-like | 3 | 124 | 7.23E-26 | IPR036465 |
| SUPERFAMILY | SSF81811 | Helical domain of Sec23/24 | 143 | 250 | 5.23E-20 | IPR036175 |
| Gene3D | G3DSA:1.20.120.730 | Sec23/Sec24 helical domain | 133 | 250 | 5.4E-36 | - |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 4 | 121 | 1.5E-32 | IPR036465 |
| Gene3D | G3DSA:3.40.20.10 | Severin | 251 | 315 | 5.4E-36 | IPR029006 |
| Gene3D | G3DSA:2.60.40.1670 | - | 122 | 132 | 5.4E-36 | - |
Gene Ontology
Biological Process:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07100.1 | Sec23/Sec24 protein transport family protein. Encodes SEC24a/ERMO2. Required for endoplasmic reticulum (ER) morphology. | 0 |
| RefSeq | XP_044971246.1 | protein transport protein Sec24-like At3g07100 [Hordeum vulgare subsp. vulgare] | 0 |
| Q9SFU0 | Protein transport protein SEC24 A OS=Arabidopsis thaliana OX=3702 GN=SEC24A PE=1 SV=2 | 0 | |
| TrEMBL | A0A453A8D4 | Protein transport protein Sec24-like OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Thinopyrum elongatum | 5 | Tel2E01G041700, Tel2E01G041800, Tel2E01G041900 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.49335.1 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19638 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22614 |