Basic Information
Locus ID:
Tel2E01G026300
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
histone deacetylation
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 10823606 | 10826055 | - | Tel2E01G026300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.67 | 50,949.09 Da | 43.69 | 71.58 | -0.89 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02671 | Paired amphipathic helix repeat | 403 | 446 | 9.8E-5 | IPR003822 |
| SUPERFAMILY | SSF47762 | PAH2 domain | 381 | 447 | 2.62E-12 | IPR036600 |
| Gene3D | G3DSA:1.20.1160.11 | Paired amphipathic helix | 386 | 447 | 4.3E-12 | IPR036600 |
| ProSiteProfiles | PS51477 | PAH domain profile. | 376 | 449 | 11.601217 | IPR003822 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 359 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 257 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 359 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 307 | 343 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 281 | 306 | - | - |
| Coils | Coil | Coil | 180 | 200 | - | - |
| Coils | Coil | Coil | 109 | 129 | - | - |
| Coils | Coil | Coil | 64 | 95 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_044329621.1 | uncharacterized protein LOC123050963 [Triticum aestivum] | 0 |
| TrEMBL | A0A7H4LA62 | Genome assembly, chromosome: II OS=Triticum aestivum OX=4565 GN=CAMPLR22A2D_LOCUS89 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg11775, jg22963 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8461 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah036272 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg40055, Sbi_jg55383 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014028 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl00253, Sgl05306, Sgl05781, Sgl12210, Sgl17582, Sgl23688 ... |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000018313, gene:ENSEOMG00000020225 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.1AG0019340, CQ.Regalona.r1.1BG0003680 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30049350 |
| Apiaceae | Apium graveolens | 1 | Ag11G03570 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G001780, COCNU_10G001260 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103701489, gene-LOC103703867, gene-LOC120103805 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.381.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G09565, Ftri1G06661 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G19980.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10008122m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g17770.v2.2 |
| Brassicaceae | Brassica nigra | 7 | BniB02g005260.2N, BniB03g008480.2N, BniB03g028890.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0883 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0961 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g04950 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g19960, gene.Thate01g24080 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1766 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.703 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002560 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G32137 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.325, BH02.354, CH02.391 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_4AG0327470 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0096400.2, HORVU.MOREX.r3.2HG0096420.1 |
| Poaceae | Lolium multiflorum | 11 | gene-QYE76_007096, gene-QYE76_019617, gene-QYE76_019618 ... |
| Poaceae | Oryza coarctata | 3 | Oco07G000820, Oco07G000830, Oco08G000490 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g02680.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G032200 |
| Poaceae | Puccinellia tenuiflora | 12 | Pt_Chr0100854, Pt_Chr0100859, Pt_Chr0107973, Pt_Chr0107976 ... |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G018350, Chr25G016350, Chr26G001460, Chr30G015010 |
| Poaceae | Thinopyrum elongatum | 8 | Tel1E01G610700, Tel2E01G025500, Tel2E01G026300 ... |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC1AG055030, gene_TRIDC1BG062990 ... |
| Poaceae | Triticum aestivum | 13 | TraesCS1A02G374100.1, TraesCS1B02G393900.3 ... |
| Poaceae | Zea mays | 1 | Zm00001eb121210_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-37440, nbis-gene-53541 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g19255, Zma_g20833 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG08.2, evm.TU.LG12.1674, evm.TU.LG13.1117 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g12250 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.Scaffold_17_RagTag.2, evm.TU.Scaffold_7_RagTag.432 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18991, nbisL1-mrna-9071 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-11561, nbisL1-mrna-6177 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13040 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.487, evm.TU.utg000018l.383 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003604, Maker00011719 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-13377, nbisL1-mrna-8753 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11091 |
| Salicaceae | Populus euphratica | 2 | populus_peu15351, populus_peu32996 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132628120 |
| Solanaceae | Solanum chilense | 1 | SOLCI004448700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107016258 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.31269_chr11_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2862 |
| Zosteraceae | Zostera marina | 2 | Zosma01g10720.v3.1, Zosma04g23050.v3.1 |