Basic Information
Locus ID:
Tel2E01G009600
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
von Willebrand factor (vWF) type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 5414282 | 5416555 | - | Tel2E01G009600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 64,490.49 Da | 43.51 | 82.35 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00198 | vWFA | 97 | 170 | 0.0051577 | - |
| CDD | cd00198 | vWFA | 456 | 557 | 1.57622E-4 | - |
| Pfam | PF13768 | von Willebrand factor type A domain | 471 | 554 | 0.15 | IPR002035 |
| Pfam | PF13768 | von Willebrand factor type A domain | 315 | 367 | 0.46 | IPR002035 |
| SUPERFAMILY | SSF53300 | vWA-like | 295 | 371 | 4.7E-5 | IPR036465 |
| SUPERFAMILY | SSF53300 | vWA-like | 478 | 579 | 1.2E-7 | IPR036465 |
| SUPERFAMILY | SSF53300 | vWA-like | 96 | 191 | 8.29E-6 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 447 | 575 | 1.5E-6 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 254 | 384 | 2.0E-6 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 64 | 187 | 1.9E-5 | IPR036465 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_037482644.1 | uncharacterized protein LOC119361623 [Triticum dicoccoides] | 0 |
| TrEMBL | A0A3B6BWG6 | VWFA domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | CH04.2110 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0095880.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_05G188400, gene-BS78_05G188600, gene-BS78_K280100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0205824 |
| Poaceae | Thinopyrum elongatum | 5 | Tel2E01G009600, Tel2E01G010800, Tel7E01G005600 ... |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC2AG000300, gene_TRIDC2BG000030 ... |
| Poaceae | Triticum aestivum | 13 | TraesCS2A02G003000.1, TraesCS2B02G000200.1 ... |