HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: Tel2E01G005400
Species & Taxonomic ID: Thinopyrum elongatum & 4588
Genome Assembly: GWHABKY00000000
Description: WD domain, G-beta repeat
Maps and Mapping Data
Chromosome Start End Strand ID
chr2 2279765 2302299 + Tel2E01G005400
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.51 127,333.60 Da 37.63 86.03 -0.39
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd00200 WD40 823 1102 2.59186E-43 -
Pfam PF00400 WD domain, G-beta repeat 938 977 0.0027 IPR001680
Pfam PF00400 WD domain, G-beta repeat 900 934 0.0029 IPR001680
Pfam PF00069 Protein kinase domain 380 651 3.8E-30 IPR000719
Pfam PF00069 Protein kinase domain 17 298 1.6E-45 IPR000719
Pfam PF00400 WD domain, G-beta repeat 1027 1064 6.9E-7 IPR001680
SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 5 300 3.64E-67 IPR011009
SUPERFAMILY SSF49354 PapD-like 661 801 1.31E-9 IPR008962
SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 344 653 5.8E-52 IPR011009
SUPERFAMILY SSF50978 WD40 repeat-like 816 1101 3.66E-54 IPR036322
Gene3D G3DSA:2.130.10.10 - 816 1107 8.8E-72 IPR015943
Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 1 87 4.0E-23 -
Gene3D G3DSA:2.60.40.10 Immunoglobulins 671 800 1.1E-13 IPR013783
Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 339 442 2.3E-18 -
Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 109 318 2.1E-47 -
Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 465 670 1.1E-39 -
SMART SM00220 serkin_6 369 657 4.7E-10 IPR000719
SMART SM00320 WD40_4 893 934 0.0015 IPR001680
SMART SM00220 serkin_6 17 307 5.6E-28 IPR000719
SMART SM00320 WD40_4 850 890 41.0 IPR001680
SMART SM00320 WD40_4 1025 1064 1.3E-7 IPR001680
SMART SM00320 WD40_4 937 977 2.3E-6 IPR001680
SMART SM00320 WD40_4 808 847 16.0 IPR001680
SMART SM00320 WD40_4 981 1022 2.1 IPR001680
ProSiteProfiles PS50202 Major sperm protein (MSP) domain profile. 673 796 8.63622 IPR000535
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 944 979 11.678087 IPR001680
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 944 979 9.757418 -
ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 1032 1064 11.73468 -
ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 1032 1064 14.184453 IPR001680
ProSiteProfiles PS50011 Protein kinase domain profile. 17 307 37.474194 IPR000719
ProSiteProfiles PS50011 Protein kinase domain profile. 369 656 28.598042 IPR000719
ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 23 45 - IPR017441
ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 152 164 - IPR008271
ProSitePatterns PS00109 Tyrosine protein kinases specific active-site signature. 505 517 - IPR008266
Gene Ontology
Biological Process:
GO:0006468 (protein phosphorylation)
Molecular Function:
GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)
KEGG Pathway
KO Term:
K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])
Pathway:
ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)
Best hit
Source Best Hit ID Description E-value
TAIR AT4G00960.1 Protein kinase superfamily protein. 0
RefSeq XP_040259340.1 uncharacterized protein LOC109769424 [Aegilops tauschii subsp. strangulata] 0
Swiss-Prot O23082 Cysteine-rich receptor-like protein kinase 44 OS=Arabidopsis thaliana OX=3702 GN=CRK44 PE=3 SV=2 0
TrEMBL A0A453E1H2 Protein kinase domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Poaceae Eleusine coracana subsp. coracana 4 gene-QOZ80_8BG0645030, gene-QOZ80_9AG0672230 ...
gene-QOZ80_9AG0677040, gene-QOZ80_9BG0695810
Poaceae Lolium multiflorum 1 gene-QYE76_049245
Poaceae Thinopyrum elongatum 2 Tel2E01G005400, Tel3E01G846300
Poaceae Triticum dicoccoides 1 gene_TRIDC3BG003560
Poaceae Triticum aestivum 6 TraesCS1B02G294900.1, TraesCS1D02G284700.1 ...
TraesCS3B02G021200.1, TraesCS3B02G021300.1, TraesCS3B02G578100.1, TraesCS3D02G022600.2
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.