Basic Information
Locus ID:
Tel1E01G728300
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
E3 ubiquitin ligase SUD1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 539811475 | 539816783 | - | Tel1E01G728300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.28 | 91,035.27 Da | 43.90 | 115.25 | 0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12906 | RING-variant domain | 33 | 79 | 2.3E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 27 | 83 | 8.58E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 19 | 87 | 1.8E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 32 | 80 | 3.0E-13 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 25 | 86 | 18.887821 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34100.2 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_040248464.1 | probable E3 ubiquitin ligase SUD1 [Aegilops tauschii subsp. strangulata] | 0 |
| F4JKK0 | Probable E3 ubiquitin ligase SUD1 OS=Arabidopsis thaliana OX=3702 GN=SUD1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A453A314 | RING-CH-type domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH01.1398, CH08.5 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_8AG0614080 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0093830.1, HORVU.MOREX.r3.5HG0513360.1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_015076, gene-QYE76_015082, gene-QYE76_033712 ... |
| Poaceae | Oryza coarctata | 1 | Oco15G000020 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g01040.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_07G001100, gene-BS78_10G266300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0400020, Pt_Chr0505827 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr20G014250, Chr29G013220 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G728300, Tel7E01G597300 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC1AG063260, gene_TRIDC5AG058880 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS5A02G405100.1, TraesCS5D02G415200.1 ... |