Basic Information
Locus ID:
Tel1E01G627800
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
1-deoxy-D-xylulose-5-phosphate synthase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 488816952 | 488817533 | + | Tel1E01G627800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 21,142.00 Da | 41.94 | 70.88 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07033 | TPP_PYR_DXS_TK_like | 28 | 172 | 2.24531E-63 | - |
| Pfam | PF02779 | Transketolase, pyrimidine binding domain | 22 | 171 | 2.7E-32 | IPR005475 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 14 | 180 | 1.1E-51 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 22 | 187 | 4.3E-48 | - |
| SMART | SM00861 | Transket_pyr_3 | 22 | 188 | 7.8E-50 | IPR005475 |
| ProSitePatterns | PS00802 | Transketolase signature 2. | 128 | 144 | - | IPR020826 |
KEGG Pathway
Pathway:
ko00730 (Thiamine metabolism)
map00730 (Thiamine metabolism)
ko00900 (Terpenoid backbone biosynthesis)
map00900 (Terpenoid backbone biosynthesis)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G15560.1 | Deoxyxylulose-5-phosphate synthase. Encodes a protein with 1-deoxyxylulose 5-phosphate synthase activity involved in the MEP pathway. It is essential for chloroplast development in Arabidopsis | 0 |
| RefSeq | XP_044962997.1 | probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Hordeum vulgare subsp. vulgare] | 0 |
| A0A803PDZ0 | 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic OS=Cannabis sativa OX=3483 GN=DXS2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A287GK35 | 1-deoxy-D-xylulose-5-phosphate synthase OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg30242 |
| Amaranthaceae | Suaeda glauca | 9 | Sgl04338, Sgl09407, Sgl27108, Sgl43201, Sgl47995, Sgl53505 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G627800 |
| Salicaceae | Populus euphratica | 1 | populus_peu12111 |