halophFGD

Basic Information

Locus ID: Tel1E01G563400

Species & Taxonomic ID: Thinopyrum elongatum & 4588

Genome Assembly: GWHABKY00000000

Description: Homeodomain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr1	456768409	456777062	+	Tel1E01G563400

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.09	145,640.31 Da	54.45	57.13	-1.00

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd15504	PHD_PRHA_like	315	367	1.57644E-26	-
CDD	cd00086	homeodomain	1135	1188	4.48558E-12	IPR001356
CDD	cd00086	homeodomain	652	703	1.2891E-11	IPR001356
Pfam	PF00046	Homeodomain	1145	1185	3.7E-8	IPR001356
Pfam	PF00628	PHD-finger	316	370	1.1E-10	IPR019787
Pfam	PF00046	Homeodomain	655	703	9.4E-8	IPR001356
SUPERFAMILY	SSF57903	FYVE/PHD zinc finger	306	373	1.95E-13	IPR011011
SUPERFAMILY	SSF46689	Homeodomain-like	1138	1196	3.76E-11	IPR009057
SUPERFAMILY	SSF46689	Homeodomain-like	646	704	8.55E-11	IPR009057
Gene3D	G3DSA:1.10.10.60	-	650	725	2.1E-11	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	257	376	2.1E-12	IPR013083
Gene3D	G3DSA:1.10.10.60	-	1141	1203	9.4E-13	-
SMART	SM00389	HOX_1	1133	1194	2.8E-10	IPR001356
SMART	SM00389	HOX_1	651	713	1.5E-9	IPR001356
SMART	SM00249	PHD_3	315	368	1.7E-10	IPR001965
ProSiteProfiles	PS50071	'Homeobox' domain profile.	649	709	13.199593	IPR001356
ProSiteProfiles	PS50016	Zinc finger PHD-type profile.	313	370	10.9051	IPR019787
ProSiteProfiles	PS50071	'Homeobox' domain profile.	1130	1190	13.993163	IPR001356
ProSitePatterns	PS01359	Zinc finger PHD-type signature.	316	367	-	IPR019786
MobiDBLite	mobidb-lite	consensus disorder prediction	430	553	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1247	1290	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	871	888	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	954	969	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	597	626	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	722	757	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	155	186	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	461	477	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	837	851	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	493	507	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1093	1140	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	136	203	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	852	870	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	511	525	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	478	492	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1048	1144	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1247	1262	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	913	953	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	710	987	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	584	660	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	758	783	-	-
Coils	Coil	Coil	268	288	-	-

Gene Ontology

Molecular Function:

GO:0003677 (DNA binding)

KEGG Pathway

KO Term:

K11657 (remodeling and spacing factor 1)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G19510.1	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain. Encodes a member of the PHD-finger homeodomain protein family. The HAT3.1 homeodomain is highly divergent in sequence even at positions that are almost invariable among homeodomains. HAT3.1 shows a preference for the sequence T(A/G)(A/C)ACCA, different from those bound by other homeodomains.
RefSeq	XP_020161929.1	homeobox protein HOX1A [Aegilops tauschii subsp. strangulata]
Swiss-Prot	P46605	Homeobox protein HOX1A OS=Zea mays OX=4577 GN=HOX1A PE=2 SV=1
TrEMBL	A0A3B5Y4A6	Homeobox protein HOX1A OS=Triticum aestivum OX=4565 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg1136, jg15233
Aizoaceae	Mesembryanthemum crystallinum	2	gene_26514, gene_2937
Amaranthaceae	Atriplex hortensis	2	Ah000467, Ah019240
Amaranthaceae	Beta vulgaris	2	BVRB_3g054330, BVRB_5g118590
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg30667, Sbi_jg38063, Sbi_jg58607, Sbi_jg6193
Amaranthaceae	Salicornia europaea	2	Seu_jg15648, Seu_jg28469
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00006237, GOSA_00014842
Amaranthaceae	Suaeda glauca	4	Sgl00692, Sgl05708, Sgl55094, Sgl83349
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000004329, gene:ENSEOMG00000020670 ... gene:ENSEOMG00000023165, gene:ENSEOMG00000030203, gene:ENSEOMG00000032489, gene:ENSEOMG00000046117
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.3AG0000420, CQ.Regalona.r1.3BG0000340 ... CQ.Regalona.r1.5AG0024100, CQ.Regalona.r1.5BG0025560, CQ.Regalona.r1.9AG0006810
Anacardiaceae	Pistacia vera	2	pistato.v30104070, pistato.v30262780
Apiaceae	Apium graveolens	3	Ag10G02722, Ag1G00855, Ag6G02642
Arecaceae	Cocos nucifera	3	COCNU_02G019350, COCNU_06G017180, COCNU_11G013320
Arecaceae	Phoenix dactylifera	3	gene-LOC103700823, gene-LOC103713091, gene-LOC103722616
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.627.V1.1, AsparagusV1_03.2139.V1.1 ... AsparagusV1_07.2991.V1.1
Asteraceae	Flaveria trinervia	3	Ftri14G12011, Ftri14G23825, Ftri7G10563
Brassicaceae	Arabidopsis thaliana	3	AT3G19510.1, AT3G19530.1, AT4G29940.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10022305m.g.v1.0, Thhalv10024489m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp3g17570.v2.2, Sp7g27750.v2.2
Brassicaceae	Brassica nigra	4	BniB01g044670.2N, BniB03g011150.2N, BniB05g007710.2N ... BniB07g051220.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq04G2006, Ceq09G0316
Casuarinaceae	Casuarina glauca	2	Cgl04G2193, Cgl09G0350
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno13g03990, gene.Cymno18g00850
Dunaliellaceae	Dunaliella salina	1	Dusal.2002s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate09g11050
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-12, nbisL1-mrna-5669
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG07.529, evm.TU.LG08.559
Plantaginaceae	Plantago ovata	3	Pov_00007718, Pov_00012209, Pov_00039460
Plumbaginaceae	Limonium bicolor	1	Lb2G13563
Poaceae	Echinochloa crus-galli	9	AH02.3171, AH05.1708, AH07.365, BH02.3716, BH05.1860 ... BH07.471, CH02.3258, CH03.4458, CH05.1954
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0101530, gene-QOZ80_2BG0154910 ... gene-QOZ80_5AG0366390, gene-QOZ80_5BG0414160
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.1HG0077220.1, HORVU.MOREX.r3.3HG0288670.1 ... HORVU.MOREX.r3.6HG0559000.1
Poaceae	Lolium multiflorum	2	gene-QYE76_020373, gene-QYE76_055280
Poaceae	Oryza coarctata	5	Oco03G002410, Oco04G002330, Oco09G014400, Oco11G005900 ... Oco22G005300
Poaceae	Oryza sativa	2	LOC_Os02g05450.1, LOC_Os06g12400.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G486900, gene-BS78_04G036900 ... gene-BS78_09G205000
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0202763, Pt_Chr0504143, Pt_Chr0504147, Pt_Chr0602209
Poaceae	Sporobolus alterniflorus	12	Chr01G016960, Chr02G009830, Chr03G016020, Chr05G023640 ... Chr06G034980, Chr08G016090, Chr0G012210, Chr12G019780, Chr15G026280, Chr18G005260, Chr18G013950, Chr22G003610
Poaceae	Thinopyrum elongatum	4	Tel1E01G563400, Tel3E01G002400, Tel3E01G450300 ... Tel6E01G281100
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG050040, gene_TRIDC1BG056900 ... gene_TRIDC3AG040620, gene_TRIDC3BG045780, gene_TRIDC6AG015580, gene_TRIDC6BG021410
Poaceae	Triticum aestivum	9	TraesCS1A02G338900.2, TraesCS1B02G351300.2 ... TraesCS1D02G341000.2, TraesCS3A02G273300.1, TraesCS3B02G307000.1, TraesCS3D02G272700.1, TraesCS6A02G117600.1, TraesCS6B02G145900.1, TraesCS6D02G107700.1
Poaceae	Zea mays	8	Zm00001eb153100_P001, Zm00001eb232240_P001 ... Zm00001eb235090_P001, Zm00001eb293840_P001, Zm00001eb293860_P001, Zm00001eb293870_P001, Zm00001eb353320_P001, Zm00001eb371020_P003
Poaceae	Zoysia japonica	2	nbis-gene-25131, nbis-gene-33741
Poaceae	Zoysia macrostachya	3	Zma_g11128, Zma_g12189, Zma_g28601
Portulacaceae	Portulaca oleracea	3	evm.TU.LG02.1437, evm.TU.LG09.483, evm.TU.LG11.1313
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g20500, gene.Posoc07g13040
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.Scaffold_10_RagTag.1141, evm.TU.Scaffold_2_RagTag.382 ... evm.TU.Scaffold_10_RagTag.296, evm.TU.Scaffold_1_RagTag.2050, evm.TU.Scaffold_4_RagTag.2041
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-25468, nbisL1-mrna-4816, nbisL1-mrna-5858
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-10234, nbisL1-mrna-14267, nbisL1-mrna-3692 ... nbisL1-mrna-7829
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-16711, nbisL1-mrna-3482, nbisL1-mrna-4807 ... nbisL1-mrna-9769
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000008l.1188, evm.TU.utg000009l.733 ... evm.TU.utg000016l.233, evm.TU.utg000033l.196
Rhizophoraceae	Kandelia obovata	4	Maker00001403, Maker00005599, Maker00015145, Maker00016288
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-14259, nbisL1-mrna-16571, nbisL1-mrna-2532 ... nbisL1-mrna-4794
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-13992, nbisL1-mrna-14678, nbisL1-mrna-20965 ... nbisL1-mrna-6020
Salicaceae	Populus euphratica	5	populus_peu01564, populus_peu05834, populus_peu11201 ... populus_peu36258, populus_peu36259
Solanaceae	Lycium barbarum	2	gene-LOC132598971, gene-LOC132603227
Solanaceae	Solanum chilense	2	SOLCI004606800, SOLCI006657500
Solanaceae	Solanum pennellii	2	gene-LOC107008023, gene-LOC107024377
Tamaricaceae	Reaumuria soongarica	2	MSTRG.14104_chr08_-, STRG.11538_chr02_-
Tamaricaceae	Tamarix chinensis	2	TC10G0373, TC12G0432
Zosteraceae	Zostera marina	1	Zosma05g23900.v3.1