Basic Information
Locus ID:
Tel1E01G502300
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Right handed beta helix region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 423682146 | 423684078 | + | Tel1E01G502300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 50,961.61 Da | 46.61 | 75.72 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 129 | 438 | 1.2E-91 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 93 | 474 | 5.57E-125 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 77 | 468 | 4.1E-121 | IPR012334 |
| SMART | SM00710 | pbh1 | 330 | 351 | 5.3 | IPR006626 |
| SMART | SM00710 | pbh1 | 359 | 380 | 2300.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 227 | 276 | 610.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 277 | 298 | 140.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 300 | 320 | 2100.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 307 | 320 | - | IPR000743 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 81 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02460.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_037420009.1 | polygalacturonase At1g48100-like [Triticum dicoccoides] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3B5Y3D2 | Polygalacturonase OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology