Basic Information
Locus ID:
Tel1E01G500300
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 421991586 | 421998900 | - | Tel1E01G500300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 141,889.95 Da | 42.85 | 105.75 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 105 | 393 | 4.86738E-85 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 723 | 1017 | 2.20167E-85 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1040 | 1260 | 4.41944E-120 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 419 | 619 | 2.36318E-109 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 106 | 371 | 6.0E-22 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 725 | 969 | 8.6E-28 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 437 | 571 | 1.4E-20 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1059 | 1207 | 1.4E-26 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 98 | 401 | 7.32E-32 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1034 | 1273 | 1.28E-65 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 723 | 1023 | 8.76E-49 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 414 | 640 | 1.17E-57 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 687 | 1023 | 1.1E-56 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1025 | 1278 | 3.7E-77 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 94 | 401 | 1.2E-44 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 408 | 653 | 1.5E-78 | IPR027417 |
| SMART | SM00382 | AAA_5 | 446 | 627 | 5.9E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1068 | 1253 | 5.7E-10 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 104 | 385 | 27.775652 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 419 | 642 | 22.915939 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 725 | 1005 | 34.926819 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1042 | 1276 | 16.90023 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 544 | 558 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_037472672.1 | ABC transporter C family member 3-like [Triticum dicoccoides] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B5Z0T3 | ABC transporter C family member 3 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology