Basic Information
Locus ID:
Tel1E01G454900
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
PPR repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 394200523 | 394209126 | + | Tel1E01G454900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 66,923.46 Da | 49.47 | 93.50 | 0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 72 | 100 | 1.0E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 147 | 173 | 0.0088 | IPR002885 |
| Pfam | PF06943 | LSD1 zinc finger | 596 | 620 | 1.5E-11 | IPR005735 |
| Pfam | PF01535 | PPR repeat | 44 | 65 | 0.34 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 253 | 272 | 0.39 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 281 | 311 | 5.7E-4 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 176 | 204 | 0.0027 | IPR002885 |
| Pfam | PF06943 | LSD1 zinc finger | 557 | 581 | 1.6E-10 | IPR005735 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 255 | 485 | 3.5E-26 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 3 | 118 | 6.5E-15 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 132 | 237 | 1.5E-19 | IPR011990 |
| TIGRFAM | TIGR01053 | LSD1: zinc finger domain, LSD1 subclass | 554 | 584 | 7.7E-13 | IPR005735 |
| TIGRFAM | TIGR01053 | LSD1: zinc finger domain, LSD1 subclass | 593 | 623 | 2.7E-12 | IPR005735 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 281 | 314 | 5.3E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 72 | 103 | 1.2E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 148 | 174 | 0.0013 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 143 | 177 | 9.262356 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 70 | 100 | 9.240434 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 279 | 313 | 11.377887 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 466 | 505 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 461 | 505 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46050.1 | Pentatricopeptide repeat (PPR-like) superfamily protein. | 0 |
| RefSeq | XP_037418014.1 | pentatricopeptide repeat-containing protein At2g46050, mitochondrial-like [Triticum dicoccoides] | 0 |
| O82363 | Pentatricopeptide repeat-containing protein At2g46050, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E39 PE=3 SV=1 | 0 | |
| TrEMBL | A0A3B5Y2E0 | Pentatricopeptide repeat-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g004360 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4535, Sbi_jg49433 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5944 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000469 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11046, Sgl16455 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000035500 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0003120, CQ.Regalona.r1.2BG0025130 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30004720 |
| Apiaceae | Apium graveolens | 2 | Ag6G01577, Ag6G01578 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G009980 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715482 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1408.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G24567 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G46050.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001720m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g28110.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g004400.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0957 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0987 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.844 |
| Poaceae | Echinochloa crus-galli | 1 | CH05.524 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0384580, gene-QOZ80_5BG0431340 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0074200.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_014417, gene-QYE76_014418 |
| Poaceae | Oryza coarctata | 1 | Oco13G004730 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g15570.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G056700 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr19G013240, Chr27G002650 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G454900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG041570, gene_TRIDC1BG047480 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G279400.1.cds1, TraesCS1B02G288500.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb264840_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24861 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2250, evm.TU.LG06.55 |
| Salicaceae | Populus euphratica | 1 | populus_peu27670 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645556 |
| Solanaceae | Solanum chilense | 1 | SOLCI001074300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002761 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_15222 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G2243 |