Basic Information
Locus ID:
Tel1E01G452200
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Ribosome inactivating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 391917076 | 391918656 | - | Tel1E01G452200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.77 | 45,007.49 Da | 49.30 | 88.70 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00161 | Ribosome inactivating protein | 179 | 377 | 2.3E-35 | IPR001574 |
| SUPERFAMILY | SSF56371 | Ribosome inactivating proteins (RIP) | 175 | 412 | 2.49E-39 | IPR036041 |
| Gene3D | G3DSA:3.40.420.10 | Ricin (A subunit), domain 1 | 160 | 336 | 3.0E-34 | IPR016138 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 325 | 345 | 3.0E-5 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 181 | 194 | 3.0E-5 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 233 | 248 | 3.0E-5 | IPR017989 |
| Coils | Coil | Coil | 418 | 424 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048554799.1 | protein synthesis inhibitor I-like [Triticum urartu] | 0 |
| P25891 | Ribosome-inactivating protein 3 OS=Zea mays OX=4577 GN=CRIP3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A452Z810 | rRNA N-glycosylase OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH01.781, CH01.959 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_014456 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G452200 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1AG041330 |
| Poaceae | Triticum aestivum | 2 | TraesCS1A02G277900.1.cds1, TraesCS1B02G286800.1.cds1 |