Basic Information
Locus ID:
Tel1E01G366500
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 327261823 | 327302419 | + | Tel1E01G366500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 468,970.59 Da | 42.44 | 88.49 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2203 | 2349 | 4.2E-8 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 4072 | 4161 | 1.5E-7 | IPR009291 |
| Pfam | PF00169 | PH domain | 789 | 897 | 1.1E-5 | IPR001849 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 107 | 7.0E-30 | IPR026854 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1983 | 2125 | 8.4E-13 | IPR009291 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 553 | 766 | 8.3E-30 | IPR031642 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 133 | 372 | 6.1E-65 | IPR031646 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3237 | 3349 | 8.8E-9 | IPR009543 |
| SUPERFAMILY | SSF50729 | PH domain-like | 797 | 902 | 5.69E-7 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 785 | 901 | 1.2E-5 | IPR011993 |
| SMART | SM00233 | PH_update | 787 | 900 | 0.0073 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1024 | 1041 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1176 | 1196 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1517 | 1536 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1518 | 1536 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1024 | 1046 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.3 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_044449899.1 | uncharacterized protein LOC123181645 isoform X3 [Triticum aestivum] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B5Y0E0 | PH domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology