Basic Information
Locus ID:
Tel1E01G347200
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 311838687 | 311839433 | - | Tel1E01G347200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 24,981.08 Da | 69.33 | 77.66 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 160 | 203 | 1.87979E-15 | - |
| Pfam | PF13639 | Ring finger domain | 160 | 203 | 9.5E-15 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 160 | 213 | 3.03E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 108 | 207 | 1.7E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 161 | 202 | 3.0E-8 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 157 | 211 | 0.003 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 161 | 203 | 12.84335 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76410.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_044402718.1 | probable E3 ubiquitin-protein ligase ATL44 [Triticum aestivum] | 0 |
| Q8LC69 | RING-H2 finger protein ATL8 OS=Arabidopsis thaliana OX=3702 GN=ATL8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3B5YYF7 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH01.3412, CH01.3650 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2BG0168990 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0054540.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_012304 |
| Poaceae | Oryza coarctata | 2 | Oco19G009120, Oco20G008980 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g39450.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G300000 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr09G003860 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G347200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG030560, gene_TRIDC1BG036050 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G201700.1.cds1, TraesCS1B02G216000.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb022240_P001, Zm00001eb393790_P001 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12818, Zma_g15605 |