Basic Information
Locus ID:
Tel1E01G342600
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
Found in Skp1 protein family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 305178447 | 305178941 | - | Tel1E01G342600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.31 | 18,078.03 Da | 31.38 | 91.10 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03931 | Skp1 family, tetramerisation domain | 8 | 66 | 7.3E-18 | IPR016073 |
| Pfam | PF01466 | Skp1 family, dimerisation domain | 115 | 162 | 7.3E-23 | IPR016072 |
| SUPERFAMILY | SSF81382 | Skp1 dimerisation domain-like | 86 | 162 | 6.67E-24 | IPR036296 |
| SUPERFAMILY | SSF54695 | POZ domain | 8 | 69 | 1.13E-14 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 6 | 164 | 9.1E-51 | IPR011333 |
| SMART | SM00512 | skp1_3 | 6 | 114 | 2.9E-24 | IPR001232 |
| PIRSF | PIRSF028729 | SCF_Skp | 1 | 164 | 3.9E-52 | IPR016897 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
ko04110 (Cell cycle)
map04110 (Cell cycle)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04341 (Hedgehog signaling pathway - fly)
map04341 (Hedgehog signaling pathway - fly)
ko04350 (TGF-beta signaling pathway)
map04350 (TGF-beta signaling pathway)
ko04710 (Circadian rhythm)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20140.1 | SKP1-like 4. | 0 |
| RefSeq | XP_044442297.1 | SKP1-like protein 4 [Triticum aestivum] | 0 |
| Q9LNT9 | SKP1-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=ASK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B5ZUG9 | SKP1-like protein OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G342600 |
| Poaceae | Triticum aestivum | 1 | TraesCS1D02G201900.1.cds1 |