Basic Information
Locus ID:
Tel1E01G275700
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
VWA domain containing CoxE-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 238174470 | 238176970 | + | Tel1E01G275700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.83 | 60,736.56 Da | 47.97 | 86.42 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13768 | von Willebrand factor type A domain | 207 | 378 | 2.0E-15 | IPR002035 |
| Pfam | PF17123 | RING-like zinc finger | 64 | 93 | 2.6E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 58 | 114 | 1.19E-13 | - |
| SUPERFAMILY | SSF53300 | vWA-like | 206 | 395 | 6.08E-24 | IPR036465 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 32 | 112 | 1.5E-11 | IPR013083 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 208 | 395 | 3.7E-29 | IPR036465 |
| SMART | SM00327 | VWA_4 | 205 | 395 | 3.5E-15 | IPR002035 |
| SMART | SM00184 | ring_2 | 64 | 107 | 2.1E-6 | IPR001841 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 207 | 398 | 13.088156 | IPR002035 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 64 | 108 | 11.471321 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 54 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60710.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_044392517.1 | E3 ubiquitin-protein ligase WAV3-like [Triticum aestivum] | 0 |
| Q9LTA6 | E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B5XY13 | RING-type domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G275700 |
| Poaceae | Triticum aestivum | 1 | TraesCS1A02G146700.1 |