Basic Information
Locus ID:
Tel1E01G242200
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Description:
DNA recombination
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 186318844 | 186319915 | - | Tel1E01G242200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.23 | 26,081.12 Da | 49.09 | 67.00 | -0.86 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04476 | RPA1_DBD_C | 6 | 160 | 1.03486E-33 | IPR013955 |
| Pfam | PF08646 | Replication factor-A C terminal domain | 13 | 129 | 5.8E-21 | IPR013955 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 6 | 160 | 4.28E-32 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 2 | 176 | 3.2E-37 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 190 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 197 | 227 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 227 | - | - |
KEGG Pathway
KO Term:
Pathway:
ko03030 (DNA replication)
map03030 (DNA replication)
ko03420 (Nucleotide excision repair)
map03420 (Nucleotide excision repair)
ko03430 (Mismatch repair)
map03430 (Mismatch repair)
ko03440 (Homologous recombination)
map03440 (Homologous recombination)
ko03460 (Fanconi anemia pathway)
map03460 (Fanconi anemia pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_044396261.1 | uncharacterized protein LOC123120354 [Triticum aestivum] | 0 |
| TrEMBL | A0A8R7PVA3 | Rep_fac-A_C domain-containing protein OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology