Basic Information
Locus ID:
Tel1E01G221600
Species & Taxonomic ID:
Thinopyrum elongatum & 4588
Genome Assembly:
GWHABKY00000000
Short Name:
UBC3
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 146063165 | 146066429 | + | Tel1E01G221600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.68 | 12,512.10 Da | 64.66 | 81.80 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 7 | 97 | 6.13613E-32 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 33 | 96 | 3.4E-21 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 1 | 102 | 3.11E-29 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 29 | 109 | 2.7E-27 | IPR016135 |
| SMART | SM00212 | ubc_7 | 7 | 102 | 6.9E-13 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 102 | 24.554909 | IPR000608 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G02760.1 | ubiquiting-conjugating enzyme 2. ubiquitin conjugating enzyme UBC2. Homolog of the yeast RAD6 gene. | 0 |
| RefSeq | XP_039846204.1 | ubiquitin-conjugating enzyme E2 2-like isoform X2 [Panicum virgatum] | 0 |
| P25866 | Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum OX=4565 GN=UBC2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3B5YVC8 | UBC core domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asteraceae | Flaveria trinervia | 1 | Ftri13G14664 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g25710.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g005980.2N |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G221600 |